One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.153650_My8ckM/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.153650_My8ckM/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift8 ; 159 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices

dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=13; shift=8; ncol=23; --------wwtGACACGTrwh-- ; Alignment reference a 0 0 0 0 0 0 0 0 176 181 119 27 479 22 551 30 34 28 171 151 157 0 0 c 0 0 0 0 0 0 0 0 135 121 120 31 67 536 11 518 11 15 104 87 150 0 0 g 0 0 0 0 0 0 0 0 114 101 76 496 20 15 18 7 534 12 208 143 112 0 0 t 0 0 0 0 0 0 0 0 167 189 277 38 26 19 12 37 13 537 109 211 173 0 0

ABI5_M0261_1.02_CISBP_shift10 (ABI5:M0261_1.02:CISBP) 0.950 0.731 6.164 0.954 0.979 3 5 20 4 4 7.200 2
; dyads_test_vs_ctrl_m1 versus ABI5_M0261_1.02_CISBP (ABI5:M0261_1.02:CISBP); m=2/158; ncol2=10; w=10; offset=2; strand=D; shift=10; score= 7.2; ----------bgmCACGTGk--- ; cor=0.950; Ncor=0.731; logoDP=6.164; NsEucl=0.954; NSW=0.979; rcor=3; rNcor=5; rlogoDP=20; rNsEucl=4; rNSW=4; rank_mean=7.200; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 18 9 61 0 100 0 0 0 15 16 0 0 0 c 0 0 0 0 0 0 0 0 0 0 26 9 31 92 0 100 0 0 7 16 0 0 0 g 0 0 0 0 0 0 0 0 0 0 25 65 0 8 0 0 100 0 71 34 0 0 0 t 0 0 0 0 0 0 0 0 0 0 31 17 8 0 0 0 0 100 7 34 0 0 0

ATAREB1_M0256_1.02_CISBP_shift8 (ATAREB1:M0256_1.02:CISBP) 0.934 0.934 4.946 0.961 0.981 4 1 56 1 1 12.600 4
; dyads_test_vs_ctrl_m1 versus ATAREB1_M0256_1.02_CISBP (ATAREB1:M0256_1.02:CISBP); m=4/158; ncol2=13; w=13; offset=0; strand=D; shift=8; score= 12.6; --------cayrACACGTgkt-- ; cor=0.934; Ncor=0.934; logoDP=4.946; NsEucl=0.961; NSW=0.981; rcor=4; rNcor=1; rlogoDP=56; rNsEucl=1; rNSW=1; rank_mean=12.600; match_rank=4 a 0 0 0 0 0 0 0 0 23 31 19 27 70 0 100 0 2 2 22 21 23 0 0 c 0 0 0 0 0 0 0 0 31 23 27 12 18 84 0 92 2 2 6 13 23 0 0 g 0 0 0 0 0 0 0 0 23 23 19 41 10 0 0 0 94 2 66 29 23 0 0 t 0 0 0 0 0 0 0 0 23 23 35 20 2 16 0 8 2 94 6 37 31 0 0

ABF2_MA0941.1_JASPAR_shift8 (ABF2:MA0941.1:JASPAR) 0.933 0.933 4.963 0.961 0.980 5 2 54 2 2 13.000 5
; dyads_test_vs_ctrl_m1 versus ABF2_MA0941.1_JASPAR (ABF2:MA0941.1:JASPAR); m=5/158; ncol2=13; w=13; offset=0; strand=D; shift=8; score= 13; --------cayrACACGTgkt-- ; cor=0.933; Ncor=0.933; logoDP=4.963; NsEucl=0.961; NSW=0.980; rcor=5; rNcor=2; rlogoDP=54; rNsEucl=2; rNSW=2; rank_mean=13.000; match_rank=5 a 0 0 0 0 0 0 0 0 231 308 191 274 699 0 999 0 19 19 218 213 229 0 0 c 0 0 0 0 0 0 0 0 308 231 268 120 177 840 0 917 19 19 59 130 229 0 0 g 0 0 0 0 0 0 0 0 231 231 191 403 103 0 0 0 942 19 664 287 229 0 0 t 0 0 0 0 0 0 0 0 231 231 350 202 21 159 0 82 19 942 59 371 312 0 0

ABF1_M0257_1.02_CISBP_shift10 (ABF1:M0257_1.02:CISBP) 0.880 0.744 3.304 0.940 0.960 16 3 86 7 6 23.600 10
; dyads_test_vs_ctrl_m1 versus ABF1_M0257_1.02_CISBP (ABF1:M0257_1.02:CISBP); m=10/158; ncol2=11; w=11; offset=2; strand=D; shift=10; score= 23.6; ----------gdACACGTGkb-- ; cor=0.880; Ncor=0.744; logoDP=3.304; NsEucl=0.940; NSW=0.960; rcor=16; rNcor=3; rlogoDP=86; rNsEucl=7; rNSW=6; rank_mean=23.600; match_rank=10 a 0 0 0 0 0 0 0 0 0 0 21 26 68 16 73 0 18 0 12 16 18 0 0 c 0 0 0 0 0 0 0 0 0 0 21 16 18 75 8 91 0 10 4 19 28 0 0 g 0 0 0 0 0 0 0 0 0 0 37 33 7 0 10 0 82 0 71 40 28 0 0 t 0 0 0 0 0 0 0 0 0 0 21 25 7 9 9 9 0 90 13 25 26 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)													; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=13; shift=8; ncol=23; --------wwtGACACGTrwh-- ; Alignment reference a 0 0 0 0 0 0 0 0 176 181 119 27 479 22 551 30 34 28 171 151 157 0 0 c 0 0 0 0 0 0 0 0 135 121 120 31 67 536 11 518 11 15 104 87 150 0 0 g 0 0 0 0 0 0 0 0 114 101 76 496 20 15 18 7 534 12 208 143 112 0 0 t 0 0 0 0 0 0 0 0 167 189 277 38 26 19 12 37 13 537 109 211 173 0 0
ABI5_M0261_1.02_CISBP_shift10 (ABI5:M0261_1.02:CISBP)	0.950	0.731	6.164	0.954	0.979	3	5	20	4	4	7.200	2	; dyads_test_vs_ctrl_m1 versus ABI5_M0261_1.02_CISBP (ABI5:M0261_1.02:CISBP); m=2/158; ncol2=10; w=10; offset=2; strand=D; shift=10; score= 7.2; ----------bgmCACGTGk--- ; cor=0.950; Ncor=0.731; logoDP=6.164; NsEucl=0.954; NSW=0.979; rcor=3; rNcor=5; rlogoDP=20; rNsEucl=4; rNSW=4; rank_mean=7.200; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 18 9 61 0 100 0 0 0 15 16 0 0 0 c 0 0 0 0 0 0 0 0 0 0 26 9 31 92 0 100 0 0 7 16 0 0 0 g 0 0 0 0 0 0 0 0 0 0 25 65 0 8 0 0 100 0 71 34 0 0 0 t 0 0 0 0 0 0 0 0 0 0 31 17 8 0 0 0 0 100 7 34 0 0 0
ATAREB1_M0256_1.02_CISBP_shift8 (ATAREB1:M0256_1.02:CISBP)	0.934	0.934	4.946	0.961	0.981	4	1	56	1	1	12.600	4	; dyads_test_vs_ctrl_m1 versus ATAREB1_M0256_1.02_CISBP (ATAREB1:M0256_1.02:CISBP); m=4/158; ncol2=13; w=13; offset=0; strand=D; shift=8; score= 12.6; --------cayrACACGTgkt-- ; cor=0.934; Ncor=0.934; logoDP=4.946; NsEucl=0.961; NSW=0.981; rcor=4; rNcor=1; rlogoDP=56; rNsEucl=1; rNSW=1; rank_mean=12.600; match_rank=4 a 0 0 0 0 0 0 0 0 23 31 19 27 70 0 100 0 2 2 22 21 23 0 0 c 0 0 0 0 0 0 0 0 31 23 27 12 18 84 0 92 2 2 6 13 23 0 0 g 0 0 0 0 0 0 0 0 23 23 19 41 10 0 0 0 94 2 66 29 23 0 0 t 0 0 0 0 0 0 0 0 23 23 35 20 2 16 0 8 2 94 6 37 31 0 0
ABF2_MA0941.1_JASPAR_shift8 (ABF2:MA0941.1:JASPAR)	0.933	0.933	4.963	0.961	0.980	5	2	54	2	2	13.000	5	; dyads_test_vs_ctrl_m1 versus ABF2_MA0941.1_JASPAR (ABF2:MA0941.1:JASPAR); m=5/158; ncol2=13; w=13; offset=0; strand=D; shift=8; score= 13; --------cayrACACGTgkt-- ; cor=0.933; Ncor=0.933; logoDP=4.963; NsEucl=0.961; NSW=0.980; rcor=5; rNcor=2; rlogoDP=54; rNsEucl=2; rNSW=2; rank_mean=13.000; match_rank=5 a 0 0 0 0 0 0 0 0 231 308 191 274 699 0 999 0 19 19 218 213 229 0 0 c 0 0 0 0 0 0 0 0 308 231 268 120 177 840 0 917 19 19 59 130 229 0 0 g 0 0 0 0 0 0 0 0 231 231 191 403 103 0 0 0 942 19 664 287 229 0 0 t 0 0 0 0 0 0 0 0 231 231 350 202 21 159 0 82 19 942 59 371 312 0 0
ABF1_M0257_1.02_CISBP_shift10 (ABF1:M0257_1.02:CISBP)	0.880	0.744	3.304	0.940	0.960	16	3	86	7	6	23.600	10	; dyads_test_vs_ctrl_m1 versus ABF1_M0257_1.02_CISBP (ABF1:M0257_1.02:CISBP); m=10/158; ncol2=11; w=11; offset=2; strand=D; shift=10; score= 23.6; ----------gdACACGTGkb-- ; cor=0.880; Ncor=0.744; logoDP=3.304; NsEucl=0.940; NSW=0.960; rcor=16; rNcor=3; rlogoDP=86; rNsEucl=7; rNSW=6; rank_mean=23.600; match_rank=10 a 0 0 0 0 0 0 0 0 0 0 21 26 68 16 73 0 18 0 12 16 18 0 0 c 0 0 0 0 0 0 0 0 0 0 21 16 18 75 8 91 0 10 4 19 28 0 0 g 0 0 0 0 0 0 0 0 0 0 37 33 7 0 10 0 82 0 71 40 28 0 0 t 0 0 0 0 0 0 0 0 0 0 21 25 7 9 9 9 0 90 13 25 26 0 0